NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10008391

Scaffold Ga0214921_10008391


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10008391 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13404
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (11.76%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008881Metagenome / Metatranscriptome326Y
F081332Metagenome / Metatranscriptome114N
F096652Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000839110F096652N/ALYILIIKIKVMTSTKTFKTKFRLFLRRFGMLCKKAQPPRKGVRISRTIMPDGKVIEHGGFVEKPPLNNQSFLSELHIYHELKNSVKFKQPKKK
Ga0214921_1000839113F008881N/AMKKVVCINDRKLPEGAEVVNGKEYEVVEEFLNNYDQRVFIIAGIKNEGTTKMGLRWIGYDAARFANLESIAIESYEHAYAEN
Ga0214921_100083913F081332N/AMEELNTPNPQQSINAAFDSVNLINNTILKIVNDNNKSTVTRNVQHLEIMLSKEWFSEALTQQQLTDINSCIANGNSYTAEPIIEDIVTEEV
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