NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10007495

Scaffold Ga0214921_10007495


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10007495 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14531
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (65.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008023Metagenome / Metatranscriptome340Y
F012098Metagenome / Metatranscriptome283Y
F030064Metagenome186Y
F084140Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000749511F084140GGAMFTIGKCITAWQKNPSDEMLDEVVMGAEAFHAIAKELRRRN
Ga0214921_1000749512F012098GAGGMPKVHNIGPIFVQVTKFPYDWGNKLVVRGWTQEIEEPFRTSQPLILRLPKYKALVCGRWTGVKNEEEALTGALETREVTYDDFTEEKGWTPAPDSDRETGIKDFNTRLGAMDGTLNVHDWEMYNRLAEESK
Ga0214921_1000749520F030064N/AMTLGIVAGALISLGVVLSPFYKKLKRWGSWMERFMRDWEGEEVSPGRDAVPGVMERLNRMDGELSQNGGFTTVKDRVDRLYENQAILMEAFVEMGERLISIENCLTNTKSEEVK
Ga0214921_100074954F008023AGGAGVANKPTSPLDATGLAAEKAAKANQAELRKRKDEISIAAQIEAESLENDIFDPKNPETPLVLDDIEDVGVTVANDSVIIRTITDIEEMTYGVGNSYTFKAGVKYRVPSGLAAYLEQLGYIWRPN
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Institute for Fundamental Biomedical Research
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