NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10007484

Scaffold Ga0214921_10007484


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10007484 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14547
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (52.17%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005584Metagenome395Y
F019290Metagenome230Y
F030060Metagenome186N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000748416F019290N/AMEGHTYWGTTNLKVASAVAAFGAKPRPVDPVTRVIKDGQQQVTFWFISDGNGDIAKKEMERTWVDMQSDQESPIRYVRAALENRETLLGLVKRAEPIRIIQIGGQTLMVPENASPERKKALLRHI
Ga0214921_100074846F030060N/AMIKGVITSEAPQIHWKHLNVTGGRVLDLGCGFWTQAERDEGNGTAKYFLSQKPEFYMGVDINQGDITALSRQYPQGKFICEKADSAFQMDAWITENSITHVKCDIEGDEAHILQIGNVHNLKEIAIELHYSDRWLEEFKDWFKSIGFECYRYDSVSFCSEISVIYGRLKC
Ga0214921_100074849F005584AGGVGGSIQTSYFSTDLNYMIIDMWQSVTGLGSSAVSASVTDLAVSSELDVGGDVFRITQSVVVCASMISAPVIGNLCTVSGIERMIAGFSQSTDGLSYTIDMAEITT
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