NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10007300

Scaffold Ga0214921_10007300


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10007300 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14781
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (78.72%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Associated Families10

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F002515Metagenome / Metatranscriptome552Y
F002598Metagenome / Metatranscriptome544Y
F003965Metagenome / Metatranscriptome459Y
F006385Metagenome / Metatranscriptome374Y
F009531Metagenome / Metatranscriptome316Y
F017133Metagenome / Metatranscriptome242Y
F034575Metagenome / Metatranscriptome174N
F070104Metagenome123N
F093845Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000730013F000447AGGCGGMGYIEIFRLDEQGAGWVDLSDATPQELLDIEIGLFQEGAI
Ga0214921_1000730016F006385GGAGMVLDTGTLIAIVIALAGSLTMMCLFWKQNIEQHKEIRRLQIALRATRTKSQKS
Ga0214921_1000730017F002598GAGGMATKLYTIPDLLIGQNYRSRTRHFEGVIVSAQPAHPAIWYGENTEAYLVEINTRGLRNKFATVAVKVGE
Ga0214921_1000730021F002515AGGAMKKTSEELRRLMELRRSNAASAVPSKKKYDRKKCQSQMLDLKKTKETPYEV
Ga0214921_1000730031F009531N/AMTQQVAIYEMNYSCSPGGVDCWEATIQGYGTSTTASDFKTAGEALNWVLDRHPDEMLELVVTSIPAYEKEYV
Ga0214921_1000730033F070104N/AMLGYNETDIAVMTDAIEDAIKSGRLADEITDGLEKAQSFLDGLWAEGYFD
Ga0214921_1000730036F034575GGAGGMNPTDLDPYLMKQVEMGMDGADILHGHLKTLMLEAEQILDRCIEVEDESGEAMDSMARTEATGYLDALTEVYALTYAIAFAKEDVKNRREILGE
Ga0214921_100073004F093845AGGAGMIKATLTSTSGTTKEMKFNTKEHLLEFIELYKATLHQGTAVCIDAPLVGIHSGWIQGTGTKK
Ga0214921_100073007F003965AGGAMNSNVIIEVCKTHTPNKSAISNHGDDQFTFCEVCENNIERWYNDTDPERLPMWTDWKVSN
Ga0214921_100073008F017133GAGMATVNNYPKGYMNLCPCGQVVKAPDLYHEGFTWWDNPNKCKELFEGVK
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