| Basic Information | |
|---|---|
| Taxon OID | 3300023174 Open in IMG/M |
| Scaffold ID | Ga0214921_10006833 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15416 |
| Total Scaffold Genes | 36 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 30 (83.33%) |
| Novel Protein Genes | 11 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 11 (100.00%) |
| Associated Families | 11 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010619 | Metagenome / Metatranscriptome | 301 | Y |
| F011151 | Metagenome / Metatranscriptome | 294 | Y |
| F014135 | Metagenome / Metatranscriptome | 265 | Y |
| F019602 | Metagenome / Metatranscriptome | 228 | N |
| F022413 | Metagenome / Metatranscriptome | 214 | N |
| F029748 | Metagenome | 187 | N |
| F030431 | Metagenome / Metatranscriptome | 185 | N |
| F043225 | Metagenome / Metatranscriptome | 156 | Y |
| F043920 | Metagenome / Metatranscriptome | 155 | N |
| F043921 | Metagenome / Metatranscriptome | 155 | N |
| F100405 | Metagenome / Metatranscriptome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214921_1000683312 | F019602 | GGA | MDDRDLIERYILEAWDKGLTGTDVINYVQYMSSVPVFEIEPVLQNLIARMSE |
| Ga0214921_1000683313 | F100405 | AGGA | MTKSVQQYTKIFEVLQNAKAPVPVSTIRAIDGIVATRLSTYLWEIKKNTGFAVRANRDGRTVVSYELVGAGTAPVAKPAKVKAVKAPVVKAAKPVVAKAKKVTPTPVPAGDSLDGIMNAMAKSSAKKPVNLLDEIDTDVADYEDRAFAEAYIRT |
| Ga0214921_1000683315 | F043225 | AGGA | MNLDLINAELQDVALTQQQEEINLTYQDFLDTMNAYHDMMMYASHSYDEDAIFYGVN |
| Ga0214921_1000683317 | F014135 | GGAG | MSNGLTIDYDTADRITLLALKDQLKYLRKELEDFEDGKWLHPEDVTNNIKLIAALELLIPYYGGAV |
| Ga0214921_1000683321 | F022413 | AGGA | MLLAKPKLTNTLDAKQFETFAECQEYLEAYTDISMPLVEWIALGKILVAETMTPPEFYPKKVKGQIVMTKFDIEEFA |
| Ga0214921_1000683322 | F011151 | GGAG | MTGFKSKRQMAQDRFKVYCEWCHDWHYTDEVDILDVEEDIEGRDVAHFECGQPPSWNEDISRYDGTSSLVYKE |
| Ga0214921_1000683325 | F030431 | GAG | MSEIEIQINEILDTTVMLCEEIAEQVGCPVEWVEVIVEKRWNDLLFSDADFMNGYDMAKENM |
| Ga0214921_1000683326 | F043920 | GGAG | MRGSIRMLVGFLIVFGAVGTIEVNPDADLLVQMIVAVTGLAIMFTGVSAMRENAQ |
| Ga0214921_1000683330 | F029748 | GGA | MIKFLSGIAFGIFLATAGTSGIAMLIDSSVSKFQNTIKESVREQQPRQNNQQMKMESI |
| Ga0214921_1000683333 | F043921 | AGG | MKLFFIMGVLAVLTGCGTVGGAMEGAGQDLNKAGQYIKKVGN |
| Ga0214921_100068339 | F010619 | GGAG | MEDNIDFENSHPNMEQIVNAENLLPITKSVAKMLMRNPYLTLGKFFKKLSDENLQTLLEIIDEGDSEFNDGIEDIVLMTEMLSRAEGVPSQSIEDVTENVNYFGACVTCVSLARKGLVRVYYENMSFGTDLGDQVLVEKLD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |