NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10004343

Scaffold Ga0214921_10004343


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10004343 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20908
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009669Metagenome / Metatranscriptome314Y
F010817Metagenome / Metatranscriptome298Y
F014229Metagenome / Metatranscriptome264Y
F028084Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000434311F010817AGGALNKLVSILVLNFCLVGCATVTPNKIQDDKSSYDATTPKQYDKDNGGLISFIGDDALITRQARERYNNLIKMYRIKFKKEKAIDLTEDAGITPYKDNFGNELFLISSEHLVYFGVMNSWLKEKVPADNLLDKTIDKINN
Ga0214921_1000434313F014229GGAGMNKLQLASVALLSVFLGACATTNTGKVDVATSVENTLPYVKPAVVLACTVVLDQAVSGNDKIEKAKMINNVAAIVEALTVGNTPTPEQLQKALNDYLPSEKTHWANYVTVIKDLYAQQFARLNGNGALAVKVLNAIASGCKDATASYVE
Ga0214921_1000434314F009669N/AMKTMLSKIFGPNWRSSSSGIATVVAVSTAIAIHSDPSLVAFLPDNAEVYILGIAKLVAVVSGIIFALTVKDAAVTGGTVAQTNEAKDRTNGENI
Ga0214921_100043438F028084N/AMKKLVLILPLLLILNACSEQSYESRELPTKYPETPTMGSADDVTKELYKK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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