NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10003487

Scaffold Ga0214921_10003487


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10003487 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23975
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018368Metagenome / Metatranscriptome235N
F023790Metagenome208N
F082667Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000348716F023790N/AMKMLSQTRRFEVQSIFEDNKTLYIVTTRGELFPDNTQSKAITFDFKRLDGKKLTNKEEKFSDDVFNHIIKDKHGSNKL
Ga0214921_1000348724F082667N/AMYQTTAAQSKAETALGKKGFRFSTWLPFEPDANNQPAQGTEHLGTIVMVKRVTRFSTEYREINPDGSIN
Ga0214921_100034875F018368N/AMTITTLTTRGQKISNQIVSADVIEINQGPFSFTALTESILTEEDKIVLKYEVDGEMCNHEITNDMLNNAHVEDGHIVFAWAHQLSISLYKLSVVNAVE
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Institute for Fundamental Biomedical Research
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