NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10002161

Scaffold Ga0214921_10002161


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10002161 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32344
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (75.81%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008858Metagenome / Metatranscriptome327Y
F012096Metagenome283Y
F017424Metagenome / Metatranscriptome241Y
F064381Metagenome / Metatranscriptome128Y
F077999Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100021615F012096GAGGMSTWLIAAMGVVYFVVAIDQFMKGGVGTGIMFIGYALGNVGLVMVAK
Ga0214921_1000216158F008858AGGAGMSDENLKGFRQVYQETGNMGYGGGPGEKNLDKGASGSHRDNNWKKGAAQNKMAKECSIGPSKNLKDIKGGNFY
Ga0214921_1000216159F017424N/AMKDFISEIISRTRDEQAKLAITLTAGINVNSFDDYQRLVGRFEGFKEVLDIIDEILREDDEDES
Ga0214921_1000216160F077999AGGAGMAFDLSQKEDPDLRSEAECFPDIDPGIEVAGDRVLVQLRREKDRSKGGIILVDETRQTYVSMRL
Ga0214921_1000216161F064381AGAAGGLVRTIKYGGDRFVVNPDDEGAPVVFITIQAREIISRIKSFDHAQKMKAFVD
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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