NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10001843

Scaffold Ga0214921_10001843


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10001843 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35480
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000340Metagenome / Metatranscriptome1267Y
F005738Metagenome / Metatranscriptome391Y
F036197Metagenome170Y
F065528Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000184312F065528GAGGVKRLLQYKAKLKAALAEETIRARQYNAAAKALKKVTNETIELQRKVEDETIKLAQATSRTQSAQ
Ga0214921_1000184320F000340GGAMNIQDILKAVLPIVVACLAWLLGQVSDFSTRLTKIEGQMPALITKENVPTDSPLSAEARHRLKEELYKEINQLQVKVQLLEEREKYGRK
Ga0214921_1000184331F036197N/AMTIYLKHPDHGSKVATMEQEAEYDEQNGWVRYTDDTPSEEMIAAPVNTLEVKRRRKTIE
Ga0214921_1000184339F005738N/AMSWGVALRNGVAIGLGSVITLFSGTRDSGSSEGNLLTEASDNLVQENNGLILLE
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