NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10001539

Scaffold Ga0214921_10001539


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10001539 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39064
Total Scaffold Genes65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (83.08%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002722Metagenome534Y
F051711Metagenome143Y
F066596Metagenome126Y
F094997Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000153929F066596AGGMVTPQAIENRLASLSKEVDDAHDFLEQAEHSYHKAKADYEIEMAHSRMKLSTEKMRVQDVQDYALIVCQEQYKALNQAEAVVKAARANSTRIRTQVDIARSIGTSVRASLEI
Ga0214921_100015393F002722AGGAMAGRTGVRATLATFLSTPPIATLNQVFTSFPKRINFQVGSTAGQLSRAAVVVFIQSENETRLAIGGATNGWKRVDYSIVLQIFHHSLQRNAEDAMTDFDTLVDNIKTRLRSDHRFGDSTGTLVWQGAEPIINATYGEPSTVAEGATETYAELQFDVTEMIQA
Ga0214921_1000153953F051711AGGMAYINQPPDLRSMFADLDSRLRKLETATRFTFPNVTSDPSNPRKGDAWLNITTNQAKIVDASGTIRILTWT
Ga0214921_1000153962F094997N/AMVRQALEKAGANMDKGAMAARDEMMLTLIQLSKEQIEGRRPKGEKATSGQPPMNRTGNLRRSIRGEKFRKGFASYSAIVGPTIIYGRAVELGGAYAPNSWRGTSAMAGFPYMKPAFMKFRTVAPAIIAKHIGRVVR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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