Basic Information | |
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Taxon OID | 3300023174 Open in IMG/M |
Scaffold ID | Ga0214921_10001430 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 40864 |
Total Scaffold Genes | 57 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 47 (82.46%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Microbacterium phage Shocker | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F031446 | Metagenome / Metatranscriptome | 182 | Y |
F043342 | Metagenome / Metatranscriptome | 156 | Y |
F043418 | Metagenome / Metatranscriptome | 156 | Y |
F046310 | Metagenome / Metatranscriptome | 151 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0214921_1000143018 | F046310 | AGGAG | MILSVDPGDTTGIAYWEDDGTFIAREALPFEELLEKLNSFTGNIKVIVCEDYRLRGGRQIAQTGSRFVAVQVIGALKLIAKEYKAKFVLQPSNVLPIAELHSGVKRPSNHSKSHDVDAYNHGYYYLETQGLLKPKPLY |
Ga0214921_1000143021 | F043342 | AGG | VDATQELRDFYTYLWGTEPVSENPTYAYLPVEHEGKWTPFMFAWPRQVEGIIKHTLKWSAIKANVFFSPALFKAANPAKDNVLGSWTLWADFDGNAPEIWPDPIEGELYVPAPTLIVQSSLPGHNHCYWKLDNFLDDIEVLEDRNRAIAYVMHADTSGWDADQILRPIWTTNHKRNLPVVIKEWER |
Ga0214921_1000143022 | F043418 | AGGA | MGLLDDFGIDTSDIEAPSFEIEDGIFEFEIGDVFVKNGSQNYPDRSWVIVEYILGDTGQKKSEMFELPADPDNITDKERQKLGFYVARLLDLGVERSEVNSVDREDLIGLRGTLQVYSSSGKGANKGKVFQNIKNVKVARDGVSAPATAKASVAPKTSASNPFAR |
Ga0214921_1000143026 | F031446 | GGAG | VNIVASSCWGCVTGLHFECLAPVDEENGLVHCCCSLAEIMVDEDEEKRGVGRPMLDVSDITDIRSTGRKRAAMMYPIFADMKCEWAGLKYAGGGVEPIIGCGGNIIQPVKKGPNKGDRHHGPDKSVINNAPDNVHRICSPCHNRWHAQNNKFYGERPPADQPYLPLPEYELKQHDKVTLATAEEIEANEEYWASKKNLLDKVDTKD |
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