NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10001407

Scaffold Ga0214921_10001407


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10001407 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41258
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (60.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017825Metagenome / Metatranscriptome238Y
F027175Metagenome / Metatranscriptome195N
F046897Metagenome150Y
F070997Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000140715F027175N/AMTRDQKLERFAERELKRVYTELIIDDEQGGYVAFGRYHVKPEPAGFAVYHSDDLVSTFSSKRTAMSWCVADHLQQYRLAQNIRILDNKKQTLTADIHCRRGQADTSNRPEFREMVRTKLAPKIENLTLLNQELEKCLNSAKYLQLRGFAK
Ga0214921_1000140717F046897GAGMRIDEVESANSLDPNKLMGLVNFLSGRAENENAQKQISTDAFISAAQSLGFPVNQRNVISVISTPPLDSVLEPIDPNNPSVIMYKGANTGATQMPVDKAQDIVAASAKSAAGKDRGV
Ga0214921_1000140732F070997AGGAMIEVGKTYTMRMCYGEEIVAKIVSIGAATYTISKPVAVVPGQQGIQLMNSLFTADPESDVTVNISSVAMIAPVREDVGDSYLEATTGIKPVRSKILMG
Ga0214921_1000140753F017825N/AMALLFCLISSIAHAQEIIDLQKPLKCSDAQVVMNYFVDIHKETPVWVGKSVHNTHITLLMNRETRSWTMIEYDAKLACVLGAGEDRSGSSPEI
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