NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000794

Scaffold Ga0214921_10000794


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000794 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)56216
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (73.58%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029106Metagenome189Y
F088548Metagenome109Y
F097345Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000079423F097345GAGGMAYDIKLTAFPPTFVNQYVVEQLKLFGILSGFEQMTPVFPTSPTNIEDVFKNYIGAPGVSDPLLIQYERLIRFRPSPFYRNKREQLVYYLYCTDLSKINDSHRIITDALDREDSAGQDINAYCASVATDALPFNTFFHNVRVYQADETRDILELASARTVYANKLIIEYDYHTKDIIVTGPDGLTKQIYD
Ga0214921_1000079430F088548GAGGMSENTFRDTEYRSTDTTSNYKQVNSVSPIPLTPGVLGLGVGLKSVDPVLTAPIDTILYNDDSLPIEIMTDLIFENIGGQELINIARNDTVNGQTIIYQPIKNLTAVQQQYNPNNIVSLQATSDKYFQNFSIKFDEKVPDQGTGPGGAHVYIDPITGELVVEAINLKSDEQIEVEITISGTIYEAVI
Ga0214921_1000079450F029106AGGAMSKLQKIIIGLGVASAVGFTYVITALRGIPEAFDWEDDEEENYE
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