NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000014

Scaffold Ga0214921_10000014


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000014 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)367104
Total Scaffold Genes464 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)317 (68.32%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016150Metagenome / Metatranscriptome249Y
F018911Metagenome / Metatranscriptome232Y
F033804Metagenome176Y
F060911Metagenome132Y
F078714Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_10000014149F018911GAGLTDYITTFFAIFLLDIVYTYYLRCVANDNVLGASFWSVACYILGSVAVINYTTNHWLMIPAMAGAFCGTFIGMKIRKKD
Ga0214921_10000014198F078714N/AMKNKTLSFTIEQPKHRAHRVLFQENTPFKPKVVQSKIVYNRKPKHKGNQNEY
Ga0214921_10000014278F016150AGGMTEEKKSKNPFINMANDAKKKNQGEHPGLGKAPKKQGPKANTKGFGGASVVRRSGRGG
Ga0214921_1000001437F060911GGAMKIPREVRELESLIKVNKHLGIALSELTNTHSYLGSLREQKTLISVKLKLEGIIERTLQAEKLAKDSFFRKLK
Ga0214921_10000014449F033804AGGAMRNPALSGKKYFYAIGQRVRAKGLTKDQGMEFYKIDSAPDYARIAYDAGFRGLRLN
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