| Basic Information | |
|---|---|
| Taxon OID | 3300023174 Open in IMG/M |
| Scaffold ID | Ga0214921_10000005 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 474319 |
| Total Scaffold Genes | 466 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 71 (15.24%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007255 | Metagenome / Metatranscriptome | 354 | Y |
| F010014 | Metagenome | 309 | Y |
| F013277 | Metagenome | 272 | Y |
| F014946 | Metagenome | 258 | Y |
| F029976 | Metagenome / Metatranscriptome | 186 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214921_10000005176 | F010014 | AGTAGG | MTQPSFPDSHTRSNVSAFPHPKFITRTRRETNTYDTINARQFEHWQTAGKTYNRPDVNKQPQFYDMMPNSTRASDQNYRSQPRYDVGEDKGVQNPYFDKYDTTSDSRNMTRELRASVYEDKRTEFLKESEKLLERNFDHRWLNPDVMTQQAQAAESLRPKMDDIRLFYQNKPLKK |
| Ga0214921_10000005257 | F007255 | N/A | MIPVWFPWIFVGGSIFIVLSFLGSKYKEKEYRNIQYLQDFISGSIFVAFVGVLIPDIFPKFELPSFTGLSESSDFELQIGPPRLIGR |
| Ga0214921_10000005276 | F029976 | N/A | MISVPQGNDLGYSKNAKDWAIRRRVPKAAKSTSLRCNKSTSLRCEIGHGTVSETAKALVFNDDLINLRMLKVQSVLLGNIEGKPRGGLSYNN |
| Ga0214921_10000005444 | F013277 | N/A | MQQYVPPKPAPLPVDFDEFFSSLAPNEKTLHYLAQDKLGSSYFVQWTHMYTKWSKMKAEKEQKEQKSE |
| Ga0214921_1000000556 | F014946 | N/A | MTQPCSYAWRGAKGVGKRTQLLEFLKIQANKIGVPFEIKKGTWFLNKQVNGGDPDEDDDPTGKTIPYEESLLHLGYDTATMSMSDKVFLQSILSRWTGQQDVCLMASPIQSRYLVLYHAHLLTDESVLQLQECLEQYPNFVILLTTELPLCSRLRDFCFEIPVVGEDYLLREYTQKAGLLPQDVWLEFFKSTLNEWAADWSPNKITNIRNWIYICLQRNLRWTDVIMYWIMAIYETPWITNKMKGALMEILWQVESGSGWVLVTSYRIPILWEHVHLKLARQFYLCKSGL |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |