NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224558_1002250

Scaffold Ga0224558_1002250


Overview

Basic Information
Taxon OID3300023090 Open in IMG/M
Scaffold IDGa0224558_1002250 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18173
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (89.47%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000419Metagenome / Metatranscriptome1160Y
F000540Metagenome / Metatranscriptome1043Y
F007046Metagenome / Metatranscriptome359Y
F016565Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0224558_10022501F007046N/AVVITVEDGAERRTCDGETIVVSLHGALIATAIGLSSGMRISIHVYLTDKRAAARVVYIDPKNPLHCGIELDEPQNIWGVSVPPDNWDETSVLETGR
Ga0224558_100225014F000419GGGGGMAINFVHTRDGSDDSIRLQPIERLKVYLFGVTVLFAAFGMGEAVYRLLFSEFDGATDRIPVEALFGLVFAWLATKFVGDVYRNRKERSARLNFIWARNHQIRGALEGITTVAHPLKNQQSIRVIREEVDRIEWALKEILPG
Ga0224558_10022507F000540GAGMATKKAANLPPKLTETEQDLLSHIQDGYQLETDSLGGNPVLRRLKDNQEIRPLAANRNTAKALEQRGLISPGKGRDPLTIVWRLKKKIK
Ga0224558_10022508F016565GAGGMTTPASAIKDEVRLLIDVQIETFGQPAPLTSSQLHEFHYRCERIGTLCQELDRIGTKSVIERRLERAA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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