NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224558_1001782

Scaffold Ga0224558_1001782


Overview

Basic Information
Taxon OID3300023090 Open in IMG/M
Scaffold IDGa0224558_1001782 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21408
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (57.89%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057058Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0224558_100178211F057058AGGMKSMAKMRTIRLALLIFGILMSVCAGAQNSPQSPPATTPVPAFGQSAPVLNPDNPPVTGLDEPALNLRTATRSFISPALQVSEAADTNGQDAFGNTDLVNTTRVLGALDLQQFWPKSDLFLEYVGGGAFYNNPFYVRQLQAAGLEAVTRWRTGQVTLRDAFSYLPDGSFSIGAFGALPGLGLATGGMGNAMAGGALPGTQAFGSGQFGAIGDIPRLANTAILDAVQALNPRSAITVVGAFSNAHFFDNQELLINSDEVTVEGGYSHFLSRHDQIGAVYAFQLFQFPQDTGGQIYNHIVNLRWSHTITGRMSLIAGAGPQYTDLEIGGNYSHWSVSARVQLRYKLGHASLVASYEKFTSAGSGFFLGANTQAARFGYTRPLGRTWVFYGDLEYSYNTELQLPEAAIGAIGATSYNEGSGGAVFRKHLGRTYDFFAAYRFGELAFNNQVSFAGLPGPPGRISQRQIGAVGVEWHPTPTRIE
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