| Basic Information | |
|---|---|
| Taxon OID | 3300023090 Open in IMG/M |
| Scaffold ID | Ga0224558_1000345 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 54048 |
| Total Scaffold Genes | 59 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 35 (59.32%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Norrbotten County, Stordalen Mire | |||||||
| Coordinates | Lat. (o) | 68.3532 | Long. (o) | 19.0475 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009138 | Metagenome / Metatranscriptome | 322 | N |
| F013515 | Metagenome / Metatranscriptome | 270 | N |
| F035282 | Metagenome / Metatranscriptome | 172 | N |
| F071179 | Metagenome | 122 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0224558_100034514 | F071179 | N/A | MSTSERLLRAVQFNSITALRNQLGSEQFIEWLITPCHRDGMTPVEALESGLWQEVAELAEDAMSKGVAQF |
| Ga0224558_100034525 | F035282 | GGAG | MKIVVLLPFILLVRVIAHFDPHLFRYWAVHSMDYWRFWGTTWKGYAIGLAGWAILLGGLYSLVVWLL |
| Ga0224558_100034529 | F013515 | N/A | MCFPRSLLPSSIWRGRRREFAGKPKGMNKQTRKTKLLDDGFMTVPSYPFSARDIFGDLRSRLSVEHRRPMSFERLAKMLGQSKSTTYNWFDIFHHPHVLGFLCLLERLPPAERQSFIEAHCRAYPTLDDPRVAHAPGKTGKLLELLNQKAGLTIITGGTDFSRTFVFTALAHAAGRADGKLLATAGIDLHRSNLFVPVESLIYIDGDLAPDHVRRLTHRIWPRVLTSGATRLFFNRVWSCVPEVRDDLLRCAGFKHVVIAEEGALDVGDLKTKVPTPIHVLTLSTAQSVPEGILVNCRRVQRKTTGKLRFWKKCRPMD |
| Ga0224558_100034530 | F009138 | GAG | MTQNRIFERPDCRRRSLKASLTDVTKTARQWDAVFAMRVHPELLGKYTVPNVADDDEGYYLVGALVQAIDAALEGRIPSRLVSYGKFLAIDFAFLAQRRRTSSEEVLNLRAVLGPCDGSHPFVCVARQDPPF |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |