| Basic Information | |
|---|---|
| Taxon OID | 3300023068 Open in IMG/M |
| Scaffold ID | Ga0224554_1027547 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 20-24 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1664 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Norrbotten County, Stordalen Mire | |||||||
| Coordinates | Lat. (o) | 68.3532 | Long. (o) | 19.0474 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004301 | Metagenome / Metatranscriptome | 444 | Y |
| F080768 | Metagenome | 114 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0224554_10275471 | F080768 | GGAG | MLGHRLNPTIHRYEDVELIEVHSEHLECSFMVAKDEWETGKKLLNIFSPIDGNVLGFPHYRLHRANISATGPKLPDGTTAQP |
| Ga0224554_10275474 | F004301 | GGAG | MTTMQFSLFDARSAAATVGMEPSVNARNAKRQLDTLRKQLATAQADLEDVEYNLSIVAMHQRASREGKIDANWWDAAMRFGMLDPGEEPVYRLGSYPVKVLPWIRHLIFTLNAERRDVLSAIADIEPKVAALSQIIGNAIQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |