NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233356_1000119

Scaffold Ga0233356_1000119


Overview

Basic Information
Taxon OID3300023046 Open in IMG/M
Scaffold IDGa0233356_1000119 Open in IMG/M
Source Dataset NameSoil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11363
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)40.282Long. (o)-123.2869Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016574Metagenome / Metatranscriptome246Y
F061939Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0233356_100011911F016574GAGGMLETDLISRIRHIFLHPRPHVSISQATALLGWSRRRMSEAIEAGEVELWTTPVGKWFPRVEMMAKALEIWPLPVIEEALGDDADAVLPEAIRSAELRVRLPRHHIDMLEYRADQQETTVSGVLARELDGIASAHIEELSAALPGFAEAMAWPAG
Ga0233356_10001198F061939AGGAGMIRKRGILVASLLALFATGCFEIEQSIELKRDLSGTANFKLGVDMEPMITIMAKMQKEMSGDKSPLTKADIAAAKAEFKKNAKKSTTASEDPRKQAEGGLPPGVKLLDVWVAEKEFGVTTNMKFAFDKLSSLVGVKLNAKKEGEAAGDPTKKSVIDSPFQGLEIAETASTITIHTKPQNPAEKVKAEASEQGPKLDPETEKMMNDAFKNMRIAWKITAPFEVLSSNATRKEGKTLIWEYDWDKLQKLAASPKALDDLGVSVTYKK
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