NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222668_1030365

Scaffold Ga0222668_1030365


Overview

Basic Information
Taxon OID3300022865 Open in IMG/M
Scaffold IDGa0222668_1030365 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #728
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)846
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003224Metagenome / Metatranscriptome499N
F023240Metagenome211N

Sequences

Protein IDFamilyRBSSequence
Ga0222668_10303652F023240N/AVVVVNDYLEGYVQALKNVLDDIEVEKCDTVSDVRRMIRHMIDDTGSE
Ga0222668_10303653F003224N/AGQLCTYCERFDREDVQVLAEIDKSWRIQATIFRKSLAIGGLFTADLLIEAIGLPDGHPNQIGALFRSWASMGVITSMGNYVVSTRESNNGRSIRMWKRTA

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