NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222671_1002409

Scaffold Ga0222671_1002409


Overview

Basic Information
Taxon OID3300022856 Open in IMG/M
Scaffold IDGa0222671_1002409 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #797
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4465
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003482Metagenome / Metatranscriptome484Y
F041439Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0222671_10024091F041439N/ALYGSFQSTMSKIQWFCNFAFQIIDTPNYRTTCYDLIGFKKDTFNKIIYESNEILLSSIVNPAFHITMPSSVNFAGTRFIFVKFNNISVNNLNSNGITDNAMVRIDNNAPFGYMIFYRPSEVQRFIIRKQTINNISFSLTDTQGNELNVFSNDTQITLKIEYMYKPEMRSMEEGTINYELRKLSQIPMTKEAIEGVYNPETNEFIRE
Ga0222671_10024096F003482N/AMDESDILSLKQQEEFKTIIHNTKNLIKRDTGNIPSADELNDANKGLWVEHDSDNFKKMFDGLLDYCADEECYDNLDWNSVNYEVYGADYYQERFPGFSDEVYEILAKSTEEENKVVDNRIPPLKITEGEFIVKFD

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