NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222652_1011267

Scaffold Ga0222652_1011267


Overview

Basic Information
Taxon OID3300022853 Open in IMG/M
Scaffold IDGa0222652_1011267 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #371
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1732
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002602Metagenome / Metatranscriptome544Y
F049230Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0222652_10112671F049230N/AWGYKIKLPDDERITIYPINGEDLVKEHGGPLHVHIIDYEHIKFRRKQDAVMYALRNF
Ga0222652_10112672F002602AGGMKNADQIKALAVAIEDKDNQIRMLIAQQGNHEVQIAEYRQIVKELSDKLELYESKYGTVFKPSRNS

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