NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222687_1078979

Scaffold Ga0222687_1078979


Overview

Basic Information
Taxon OID3300022844 Open in IMG/M
Scaffold IDGa0222687_1078979 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1163
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)568
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009455Metagenome317Y
F040417Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0222687_10789791F040417N/AEQEFIATLSTLNQHKCYSQFRDNYNRQYFLAHRDKTNCNCGGIYTYDHKARHFKSQKHINFIS
Ga0222687_10789792F009455N/AMYMEQVQLSISPAQMTKIRKGLPIQISHGSMGNGDVIVSLHPENANKIMSAFKRGKGLRMQMDEDEVRASG

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