| Basic Information | |
|---|---|
| Taxon OID | 3300022821 Open in IMG/M |
| Scaffold ID | Ga0222673_1001767 Open in IMG/M |
| Source Dataset Name | Saline water microbial communities from Ace Lake, Antarctica - #801 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6830 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (8.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Ace Lake | |||||||
| Coordinates | Lat. (o) | -68.4725 | Long. (o) | 78.188 | Alt. (m) | Depth (m) | 13 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001894 | Metagenome / Metatranscriptome | 621 | Y |
| F003482 | Metagenome / Metatranscriptome | 484 | Y |
| F004242 | Metagenome / Metatranscriptome | 447 | Y |
| F037002 | Metagenome | 168 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222673_10017672 | F001894 | N/A | MLNEKAKIANLHYLYADLPEEKAHKKASRRLSKLGYELDRKNTNKDVLTATKGDNVHINYSGTNIRNPRDIISDIALATGVQRINPQFRERRQKTRSIMREYGDNKDYTLGGHSLGGSIALNNVSQSKSIRDRVSKVDVFNSGYTLPFHNSIKPTDKKIKRELDRKVNHHRVKGDLVSAYSHNDTAFGNLFEYKHKDNDADLLDKHSLETFMD |
| Ga0222673_10017675 | F037002 | N/A | MSYVLDTAYSNQVIFLNSNNCNFKSIDGIGSYVYNLQTPIQKPTNTMMLLSITDAQIPNVSPNVNSSNNQISFYIPTFSKYFTITVGDSDGDAVYSADEFVNEVNEKILPNALEQFYLYGTYEFSRAKVKWISNHSFQIINTASYPTTCIDLLGFRKDRNNNLQQTEDALLSSTVNPSFHITMPSSVNFTGARYIFVKFKNIGVNNLNSRGITDNAMVRIDNNAPSGYMIFYRPSEVQRFIVGKQTISNIEFTLTDTFGDELNIFSADAQITLKIEYMYKPEMRSFEEGTINYELRKLGKIPKDEETLKDIYNPETNRFEKDQIVGV |
| Ga0222673_10017676 | F004242 | N/A | MAFGTKKPASARIGLKKQAHHMNRLGLKASNLAMSAGAVVALAGPEALPVASALEVAGGAGKAIFGLGSKLV |
| Ga0222673_10017679 | F003482 | N/A | MDLHDAKQQFEFKKSIKDTYSLIKRDTEHIPDLSTLDDDNKGQWIEHDDFAKVFDGLLDYCADEEYLDNLDWNSVNYQVYGKDYYEEKFPGFSDEVYEILAKSTEEENKVVDNRTPPLKITEGEFTLNFD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |