NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222622_10745223

Scaffold Ga0222622_10745223


Overview

Basic Information
Taxon OID3300022756 Open in IMG/M
Scaffold IDGa0222622_10745223 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)714
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9201Long. (o)-106.9487Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F002111Metagenome / Metatranscriptome592Y
F007262Metagenome / Metatranscriptome354Y

Sequences

Protein IDFamilyRBSSequence
Ga0222622_107452231F000280AGAAGGMAQNPDDQRRPAPARPLFGYRDVGEDVRHGRSAMTRAWIVLAILIVIYLAWTLTVYFLEPGLR
Ga0222622_107452232F002111AGAAGMVAASVLPFVSYSSMTETLIPAAEWPTVYSSLQALKGHVQEYPGCQGFDVFVRAEGDGDVLVNCYTTWDTAGQLEVFLERGYTFERLLADIGSGLGPARSLVMEKVF
Ga0222622_107452233F007262N/ARQRTGIYPVDSFGGWTTEGAGPATGFFLLFTAIIVGFAVALIVGHIVWGQKF
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