NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222622_10095517

Scaffold Ga0222622_10095517


Overview

Basic Information
Taxon OID3300022756 Open in IMG/M
Scaffold IDGa0222622_10095517 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1815
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9201Long. (o)-106.9487Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F000805Metagenome / Metatranscriptome883Y
F001079Metagenome / Metatranscriptome785Y
F001935Metagenome / Metatranscriptome615Y

Sequences

Protein IDFamilyRBSSequence
Ga0222622_100955173F000805AGGAGGMAMPSGSSPEKSQQFYHYLQAHQLTMQKADTWHVRWMDLAWLWGFMIVLSLAIIWWVWQYRSTRQKTGIYPIDSFGGFTTEMAGPATLFFILLTVIIAGFAVVLIVGHIVWGQKF
Ga0222622_100955174F001079AGAAGMATAEGAAAASALPYVAWSSETVAVIPAADWPFVYSSLQALKGHVQEYPGCQKLEAFVAVSDGSFRIDCYTTWDTPEQLEAFLERGYTVERMLMDVAGIAAEPTRVVEKVF
Ga0222622_100955175F000280AGAAGGLSDRTPEETGPARPLVGYRDTGAEPHRYGRRAIVRAWVILAILAAFYLGWTLTVYFLEPGLR
Ga0222622_100955176F001935AGGAGMWVKHLSSLQFLTYVAFFAVVIAAICKFVPGRAPPVREEPYPDEELHAHDAKTAKYFIAGSLFLVLGSLHMVLKNLPWLAEYLARTGYAGHLVRDLSNTHVMIVGGGTLLATGL
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