NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10146994

Scaffold Ga0214917_10146994


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10146994 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1254
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003304Metagenome494N
F041081Metagenome160N
F058800Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_101469941F041081N/AKYTAYGNAEIDTITEDIGPVGYREHYYAQVVNNVIMSKIEISTDTEDIKNPDKDLLEKADDALCRQAEEDFDAGK
Ga0214917_101469942F058800N/AMKAALSWLFYYLGDMTSRTIMKIGIGYGLYKTLMLWSVDMDKKFDVWKEVKPNRRNKE
Ga0214917_101469943F003304GGAGGMKRALVTQAFGDDWKKVLDLTRPRMEAYCKRHKIDFLALEKPLVEPVQYSKSAIGNIMATKGYDQITFVDSDILIASDCDDMGAEVNMFCAFDEGAFLDRKYHMGKLASAFGAQIDPRFYVNTGVFVISSKAAGVLSMPPLGLLPNHFAEQTWMNIMIHLWNVPIDQLDPAYNCMTSVESHFGLDRYKDAYCIHYAGQSGDMPKLIEQIKSDDAKLVELGR
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