NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10048755

Scaffold Ga0214917_10048755


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10048755 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2894
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002644Metagenome / Metatranscriptome540Y
F003213Metagenome500Y
F011486Metagenome290Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100487552F003213N/AMTSKKINKAKRQIGDQTTKGGLIGLFIYVMTKNNVDPMLTAMLTPMMSGLLAYLSTKIGDPDLACMFIPKDDNQSK
Ga0214917_100487553F011486N/AMPMRPYTITQQPVVKAPLAGMNKWVELCCKHSDGSLWNNGTFVNRDVRGKPGIISNHARGLATDLSYRWQAQQKRGRQDGRKISLAYMNKLLENADTLGIQLVIDYALKRSWKCDRGSWQAGNFEQGDWYHIEIDPTIANDAALAKACWVSVFGVSPLNKPQSV
Ga0214917_100487555F002644AGGMTGNINPTTDPQLRALMQVMNEITANRVPFYEPHELAARSTLRALQHEIDDRNVLDDGELIDTLNQARIEIKYLCSIITDLLERVKQRDVEIGIKQLKLNENEVEIQRLENMVHRAN

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