NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10039500

Scaffold Ga0214917_10039500


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10039500 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3373
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007164Metagenome / Metatranscriptome356Y
F010463Metagenome303N
F014488Metagenome262Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100395002F007164AGGAMSEKQVGMELLKTVRLLDKAKENAIEQMGVVIGLAADAGDILLSARTEGLDIEAIHTLAQINGEQGRRLERVAKARPSLQAPAPGHLKQLALWAGLLPDPIETSTPKGESAWHSYIVKARQWLARKNVRQWSPSQKEQFLQEAKPIVEAYLEAGGELPHA
Ga0214917_100395004F014488N/AMNHHQGQDPADSILASYTPNMADHIDTLEDRVKERLAQMKAMNPAIDLDQLAKLTAEVVEQTIKHEGDSQMLRHRRDDTLDEALLALASNRSPDSLTAIAKRYINPSTGKPYTRAAISARLTELSQRTGLVLRIQRSERVRQIYKERALRVHKKRREECPKWNKDAWAKGIKRRKVK
Ga0214917_100395008F010463AGAAGVNELVLAATIHRVKMCEDRIREFEQMVTTLTAQMAHNRAELASKGLANLVMGTTTPLDIPKELVPTYGKYRARGNRSHSVVKKRWEIWKAQHESGLSLQEIAKAWGCHHTSILNAKKRNFKARKATGRNTK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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