NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10033138

Scaffold Ga0214917_10033138


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10033138 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3827
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010897Metagenome / Metatranscriptome297Y
F025679Metagenome / Metatranscriptome200Y
F035215Metagenome / Metatranscriptome172N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100331386F025679GGAMTKTFKIGETALGGTIKVSIPKTLTNIKIDVISTNHITRDSCDAPYLINQYIYYSFDRIRIERDLFQIVSGYWSDQILAWINKSWQSQLAKI
Ga0214917_100331388F035215N/AMSRKRRMKMKSSEQIAKEISDRIAEYKVLMVEHDNNQSAVDELESAIHELDHLLRWINE
Ga0214917_100331389F010897N/AMPDGVFLKDIRKIDFGNTKLNWHGRAWGSMRVHIGVPKYGKYIRPYNTGGRKGYLSVETYSWEEGLIELISHELRHLYQWKKGKYYHGIKKIRKYNMGTRAKLCEVDASLYAKRKVREYRKGNYKLNLV
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