NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10028312

Scaffold Ga0214917_10028312


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10028312 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4293
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006658Metagenome / Metatranscriptome367Y
F013889Metagenome / Metatranscriptome267Y
F074802Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1002831214F074802GGAGGMTTKCTCSYIQIGTKTSNNQNLNPDCPLHGTDSLWYNSPEQVKKREEMSQRLRELYDTARKARENV
Ga0214917_100283124F006658AGGAGGMENEMSTGELIDSEKFQEEQSKKNTMLETFNSPEMAKLREDLAKAHKDSIEKSVGWYYMLSAEDKYKAVEALCHIICKAEREGTSHRGLMSELGVYPEAFWISDLMTIHNSLVVEYQEQDSRNWKEVKEDLETLNNVSISTQNVND
Ga0214917_100283129F013889GGAGGMSRTHRNLEGMHRGALRFPQTTKEIRQLDAIVNDPELKEYPVSGLNHMKSREHNLPTAWDDRVVSGYEQMDYK
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