NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10021461

Scaffold Ga0214917_10021461


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10021461 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5264
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019450Metagenome / Metatranscriptome229Y
F037622Metagenome167N
F098896Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100214611F098896N/AHAPCRPHAGLPQAKCKDASNKTPKTQMWCNALRHITAQDIVEASMKALELEDKSHATK
Ga0214917_1002146110F019450AGGAGGMESIKHSWCVYNSQGQFFARFTSFARALRWAVKNGMEWTAEIRKERENTI
Ga0214917_100214617F037622N/AMTEDQIIKAYLSRLGKKGGSVTGPTKARKMGKAHYQTVAQRQRERWDKWRLENGRPAIKRER

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