NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10015865

Scaffold Ga0214917_10015865


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10015865 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6498
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004208Metagenome / Metatranscriptome448Y
F013514Metagenome / Metatranscriptome270Y
F014121Metagenome / Metatranscriptome265Y
F018913Metagenome / Metatranscriptome232Y
F090316Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1001586512F013514GGAMIMNLEEIQKFLDDNNITLEEYLRENMITDEERKYIDKIWVDAIYRNLGEDTP
Ga0214917_1001586517F090316GAGGMPDDLQREELFFKALKEYKEKKSQEPQDKTTNTLPAVIATVL
Ga0214917_100158652F004208GGAGMTYKLNPEAKAFSYTRENLFECITKIVAHPHNTITEHDQSRAIAIMLVFEDYLTNHTQSDNNGGYCVYECDALDFQDFAIQKLGLEYYHYVDVDEVLK
Ga0214917_1001586521F018913N/AMNEFNSNQQRAEELLKVICKSEAHNTAWMLQEVLQHLRKQLSGTNKIDFTDELDVMFNAGWDECLKEIDAICDELLEL
Ga0214917_1001586522F014121N/AMMNNTAYQIWETFKAELIVEPTDDMKEALASSIRVISSLIYRDGVLADEPWHFYIAQELNEYADELEAL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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