NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10006668

Scaffold Ga0214917_10006668


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10006668 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11923
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (54.05%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004208Metagenome / Metatranscriptome448Y
F012341Metagenome / Metatranscriptome281Y
F013889Metagenome / Metatranscriptome267Y
F056606Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000666814F056606N/AMTIRAEKIVNATLELTLRPQSEDRKKVVACVIREVADRLCTDLGEMECPIDKLREIADEVEAL
Ga0214917_1000666824F004208AGGAMTYKLNPEAKAFSYTREELFECITKIVAHPHNTITEHDQSRAIAIMLVFEDYFTNYTQSDNNGGHCVYECDALDFQDFANQKLGLEYYHYVDVDEVLK
Ga0214917_1000666829F012341N/AMKIPMKEFFKMVTKTIAEPNTTITEQDKRKAIRVFLYLDEFMMENVPEYCDDTSELGEIDFGAYAAGVLDELEGK
Ga0214917_100066687F013889AGGAGMTRTHRNLEGMHRGALRFPHTTKEIRQLDAIVNDPELKDYPVSGLNHMKSREHNLPTAWDDRVVSGYEQMDYK
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