NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10006070

Scaffold Ga0214917_10006070


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10006070 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12690
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (31.58%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008358Metagenome / Metatranscriptome334Y
F013889Metagenome / Metatranscriptome267Y
F040099Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000607012F008358N/AMNPYYIYFIIFFCIGYLIVTDSSVARLFVLLTELVRIQYQKTKWYIQHSPDNPLVKFMIHRRSMKIAKELMNEFAEKEKKI
Ga0214917_1000607013F013889N/AMNLQKKKKRYKIVMCLFTNIMSRTYRDTEGWHSGAFRYPHTENERKQLEGVLHDPELMELPVSGLNHMRSREHRLPSEYNDKVISAYYEV
Ga0214917_1000607017F040099N/AMIYEVQTYDTIDNTVYYEIAENAIDYEDARDIMVEKYPNRKVIAVIGKKL
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