NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10005685

Scaffold Ga0214917_10005685


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10005685 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13228
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (32.26%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013889Metagenome / Metatranscriptome267Y
F072274Metagenome / Metatranscriptome121Y
F080901Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000568510F072274N/AMLMNTDGYISSDGTWAAVPWGNKYVSIYNGEQICTHHTLETAKKFIQKETRKKK
Ga0214917_1000568515F013889N/AMSRTNRNLDGMHRYALRFPHTFNEIKQLDGILHEEDLEGLPVSGLNHIKSRGHNLPSAWDDKVISGYYQEDFK
Ga0214917_1000568527F080901GGAGMTEPNEFGKTLQEWWDSDACKQLQEASKESVQKAVGKYHMLSVEDKYDMVQAICYIMCKAEKEGTSHRGLQDALGIYPEGFWISELMDVHNSLWSEFQKRKNDAELDREIQLLQDFTET
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