| Basic Information | |
|---|---|
| Taxon OID | 3300022752 Open in IMG/M |
| Scaffold ID | Ga0214917_10004469 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15523 |
| Total Scaffold Genes | 27 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (70.37%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000141 | Metagenome / Metatranscriptome | 1941 | Y |
| F000506 | Metagenome / Metatranscriptome | 1070 | Y |
| F007522 | Metagenome / Metatranscriptome | 349 | Y |
| F015995 | Metagenome | 250 | Y |
| F019825 | Metagenome / Metatranscriptome | 227 | N |
| F021981 | Metagenome / Metatranscriptome | 216 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214917_1000446910 | F015995 | AGGAG | MPVEVVGVKDVLKGLSFIDQDMRQRIRIAIDPLMRNVATKARGFVPSNSDVLSGWTKASTGVGKFPKYDASIARAGIGYNPGENKTFKNGFAVSNYVYNASRPGAIYEVAGRLNPQGRAPFQMTPSKGASGTYTLKSRGSKAFREYNSANPFASQQFIAALEPVTSQPKIKDIRGGGRKTKGRLIYKAWAQDSPKVYDAILNAINATAIHFNKSTEVKKAA |
| Ga0214917_1000446921 | F007522 | AGG | MTLKEAGLLWVASMVAIIWAYGIYENAKQTHYWRGRKDGWDMHRRMIQNKTDADIN |
| Ga0214917_1000446922 | F021981 | N/A | MPTSTEKLFNNATAIVHERGVVYGHAIYNMERIAKSVSAYIDYPIMPHDIPIINVLQKISRLAESPGHEDSIVDICAYMAIYKMCIEAEKDNEYEWRAGE |
| Ga0214917_1000446924 | F019825 | AGGGGG | MGYVEILRGGPYLERMENDQVKFIPSTDLCIACNDDRLIHSGNYLICTQCQCRQ |
| Ga0214917_1000446925 | F000141 | AGGA | MYPQFKCNGCKAKTEFLWLEQLDTPEGFKAYQCMSCGCVGIKNIAEALHIPDSDICRCDKCGGWKFLAVDCHTCQLIGAK |
| Ga0214917_100044699 | F000506 | AGGAG | MAKLKITRANGEVSEHKITPGVEYAFELKYGAGISKVLRDHERQTEIYFLAHECLRRANVTVPIFGLEFIETLDTVEVLDEEKK |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |