NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10004383

Scaffold Ga0214917_10004383


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10004383 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15706
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (75.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F043359Metagenome / Metatranscriptome156Y
F064189Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000438322F043359AGGTGGMEWYNSHKNPPEVGQKVYYFGENIGIGIGHYSYDEDQHIDTPNGRVDLCPHLFINVSFGLVDACDAPYWLPYDEDLAKGWCPIIPEQYTKGLYD
Ga0214917_1000438323F064189AGGMAKNFKDLHTVDAKDMTRDQAMVYIINFFNSRMATMSNAHRNKVKELIGLHEIATSELVNKYLELVLENS
Ga0214917_1000438330F000325AGGAGMKYAEGNDKLGKNCLVVSRPVGDTCPNDCAFLGNGCYAEQTEKIYPGVRPAGMQNLITEKNRIRSMILEAKRRNRSIRFMERGDWLLNGDLDISFVENVVWACESIIADGNTLPKMWFYTHVYDERIPAKLGKYFSIFASIHNAEHMTIAKSKGFTKFAWCDSDMKVAPKRPKNKAKADVWRAALPKLVVLNGEKFVTCPEIRRGRSVVTCTGTKDSIACNMCLDSNKPNVLFPAH
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