NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10003553

Scaffold Ga0214917_10003553


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10003553 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17895
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (69.09%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007110Metagenome / Metatranscriptome357Y
F054798Metagenome / Metatranscriptome139N
F056376Metagenome / Metatranscriptome137Y
F060726Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000355312F060726N/AMYGDNKSVLYGKKMYRNVLLTDKEIALLKSVISQTLHDKVSIDRNNLTIIHNRLREIKPLVSNNQFFNYGK
Ga0214917_1000355317F056376GGAGMTLIKCFSNVIGHKEAQDLVVDLNQMKSSQSDPFYIKYDKHQDYSKDDNYLVVGNVTQNDWDELNLDMDFMIADIV
Ga0214917_1000355322F054798GGAGMIYLYLNETQRLAEIVSELVKLNMGVVAELHGNRWHIEVTQ
Ga0214917_1000355346F007110GAGGMNCIYCKTDVGIDRYEFLVETGRKIICKECSMEQRAVGFMNFSHKTAPDLVVCPANAKETLRILHRANRRAR
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