NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214917_10001225

Scaffold Ga0214917_10001225


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10001225 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33271
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (56.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F040587Metagenome161Y
F064189Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000122546F000325GGAGMKVANGNDKLGKGCLVVSRPVGDTCPSSCAFLGAGCYAEQTEKMYPNVRPAGMQNVITEKGRIRAMILDAMRQGKSIRWHERGDWFLNGELDLDYVANVTWACESIVSEGKTLPDMWFYTHIYDSRLVAMEKYMNVYASIHNANDKAAAVAAGFKLFAWCDSDEKIAKKRPKRKNLADAWRKSLPKLVVIDDTKYVTCPEIRRGRGVVTCTPTKGSVSCDLCVRGLANVLFPAH
Ga0214917_1000122551F064189AGGMVLLGIIQRIIQMAKNFKDLHTIHVEHMTRDQAMIYIINFFNSRMATMSNHHRNKVKELIGIHEIATSELVNKYVELVLENS
Ga0214917_1000122553F040587N/AMGKDTTKGAMMIQWIGVFITVLGLAYTGFKDYQKGDIKIPTIQKPLTTIKYPIQYCLMAYDPNLDKVFYLHENGTWYDYAPEQRRYATTPQVRR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.