NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10001018

Scaffold Ga0214917_10001018


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10001018 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36758
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002722Metagenome534Y
F051711Metagenome143Y
F066596Metagenome126Y
F094997Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000101825F066596AGGALVTPQAIENRLASLSKEVDDAHDFLEKAEHAYHKAKADYEIEMAHSRMKLSPEKMRVQDVQDYALIVCQEQYKALNQAEAVVKAARANSTRIRTQVDIARSIGTSVRASLEI
Ga0214917_100010185F051711AGGMAYINQPPELRVLFADFDRRLRLLETATRFTFPNVTSDPSNPRKGDAWLNTTTNQAKIVDATGTVRILNWT
Ga0214917_1000101851F002722AGGMAGRTGVRATLATFLTTPQIATLNQVFTSFPKRINFQVNSTAGQLSRAAVVVFIQSENETRLAIGGATNGWKRVDYSIILQIFHHSLQRNAEDAMTDFDTLVDNIKTRLRSDHRFGDSTGTLVWQGAEPIINATYGEPSTVAEGATETYAELQFDVTEMIQA
Ga0214917_1000101856F094997AGGVIITNLKQVRQALEKAGANMDEGARNARDEMMLALIQLSKEEIKGRRPEGQKATSGIPPMNRSGNLRRSIRGEKFRKGFASYSAIVGPTIVYGRAVEIGGQWAPRSWKGTSAMAGFPYMKPAFIKFRTVAPAIIAKHIGQVVK
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