NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10000942

Scaffold Ga0214917_10000942


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10000942 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38035
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)55 (91.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000368Metagenome / Metatranscriptome1223Y
F002301Metagenome / Metatranscriptome573Y
F010680Metagenome / Metatranscriptome300Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000094234F000368AGGMETLKQVSLTWFRAAAAAAIALYLAGETNLKVLGTAALAGFLGPVLKWLDPSAPEFGRGA
Ga0214917_1000094235F010680GGAMIVELSQEEVRVCTLLAVERWLTKFGSLDKPNYAEGKRLGKLEPELNANIRANVSEWAVAKEYDLTWSVPWYPNSLHKRRKNISDVGNFEVRTVRTQTAIPFWEKDKDRIIFGTKVLDVEYYSKVEIYGQFKGSDYMTPEYRDESISGWRVPVELLSS
Ga0214917_1000094238F002301GGAMAQEYIAEYDALVASLAVEYHRRYPMLEALDIQQVLWLWFLTHPRKYAEWSALERKDKDKLIAKSLRNAAITYCEKEKAKTVGYEILDLYYYDATVIEAFLPSIISETYEMPVKIKDLNFKFNKTEPSNDGNNWLVLRSDIASAFYKLSEAKQNVLRIRFSTDNNEWSLIAKDLKTTPDGARMKVQRAVNSLIRNLGGWRPFPDEDGPVIEEDEDEPTETH
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Institute for Fundamental Biomedical Research
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