NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10000832

Scaffold Ga0214917_10000832


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10000832 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40122
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)53 (86.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000368Metagenome / Metatranscriptome1223Y
F002827Metagenome / Metatranscriptome527Y
F005146Metagenome / Metatranscriptome410Y
F006743Metagenome / Metatranscriptome365Y
F019314Metagenome / Metatranscriptome230Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000083232F019314AGGAGGMNKKGGREKASMQKPTEGKMDSKKPSGPGKAMFGYTPAGRKGKKA
Ga0214917_1000083242F002827GAGVNKEYLQAKANLCRDLAIEQMVDGNPNEAGKNLMRMVNALNELNLINYREGKENEASKLL
Ga0214917_1000083243F005146GGAMKLVNFYEVMDRKGDIAWGGASSSEAITWFRRGLDSAIFVSVWDEEDGEDPRLVTDKIEITGPVLAALMSGRFS
Ga0214917_1000083246F006743AGGMRGLRLVGEEENGNAFSLYGPMKAGLTTTHRTQSLQLSASLNSLERKVEDLTYKYLEVSSILTSVMEDLVRLGLIGNGSSIIDEEDKAE
Ga0214917_1000083258F000368AGGAGGMDKKLKALAATWFRAAASAAVALYLAGETDPKKLGTAALAGFLGPVLKWLDPNAKEFGRGSK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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