| Basic Information | |
|---|---|
| Taxon OID | 3300022752 Open in IMG/M |
| Scaffold ID | Ga0214917_10000389 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 57512 |
| Total Scaffold Genes | 122 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 113 (92.62%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F047653 | Metagenome | 149 | Y |
| F051080 | Metagenome / Metatranscriptome | 144 | Y |
| F073469 | Metagenome | 120 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214917_10000389111 | F073469 | AGGAGG | MARTKKDVTAKHRVKRTLDTIRLLRGFDRAAHFAAGGTPADWRGVHDIRPDKRKEACRRACRRRVDDEA |
| Ga0214917_1000038973 | F047653 | AGGAGG | MNPGDLVFIMGDPSRPILGTRTVDGLNCTETITHGTPALVVDVDILDHVAKLVYVKVLVQGVTLWVPGGFVKASNEAR |
| Ga0214917_1000038992 | F051080 | GGAGG | MQFYSYVTETPDTPGQTDEPVGSGGRSIDRDLKTVRGVVRRLEKAWPGRSFKVFSFTNIYDPRTHRLVHTHRA |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |