NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10000166

Scaffold Ga0214917_10000166


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10000166 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)81060
Total Scaffold Genes119 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (18.49%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001145Metagenome / Metatranscriptome765Y
F001219Metagenome / Metatranscriptome744Y
F012124Metagenome / Metatranscriptome283Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_10000166102F012124N/AMLFLLATPEYSNLQSNTTKVKVHLRSGVAEIFEQHQDLMGKVENNIIEIETNFENKFEKSLFILQDAVFVVSNQGLDTTAETKGTGVYVYAKKVKEITSTISVDDVTKQYEQKVAELEVENQKLAGDANDKVINSKIFLLKDEVEFLKKVVTIVKEFKS
Ga0214917_1000016681F001145N/AMISNFVSFLLNHEESFIEFNTNILETNVINIAILVGLLVYANKVSFSVGLENRQKEIIQTIENAQKDVVNASNYYVLAEKGFTQSLFWLQSWKALYEKDKMDVVNTKYNLVKTGLTETFVTTENLIKNFENKSFVALQKYIIFITASKILRKFLFLSEKEQSKLIETKISNLGGGNK
Ga0214917_1000016682F001219N/AMIFSNSFLLNAGGLFDFDLTFVAEAVLFIILALVVTFAFVNPISKQIDERAEFINYTLRKSTILLTLGYEKLISCVSLLTDEIGEMNRQLKSTKNYTNSKFEAEITTVQQENGKLLSKLKTDLSVKSAYIFSNLTTELVTLTDNFFAKKFQSAS
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