NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0242675_1003602

Scaffold Ga0242675_1003602


Overview

Basic Information
Taxon OID3300022718 Open in IMG/M
Scaffold IDGa0242675_1003602 Open in IMG/M
Source Dataset NameMetatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1571
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisoma → Acidisoma cellulosilyticum(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039840Metagenome / Metatranscriptome163N
F047246Metagenome / Metatranscriptome150N

Sequences

Protein IDFamilyRBSSequence
Ga0242675_10036022F047246AGAAGGMRSYQLRAAILALACLTSAGPALAQNPSTTPAAPAQEVPTPPADNPTFLDGLRRVGVMAGQVVECSADADKQDQISRAMELANLIAIHFGLKAAFTFTGALGYGSGRPFDKAGCSQAVDGWKQIQAKYLNK
Ga0242675_10036023F039840N/AACTTQQSSTDPLSATWTGAGPNAGPAHVGGSPANTTTAFDGTYQGVSNRSASTAGTGRKTVEANVTGCQPFDAPPTLTVTNGLAQFQAMGVTFAGYVTPQGHLTMHSGYGATATGQARPALVDEDFDGNFETQTHVLHARVSSVNCTYDVNWQRIT
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