NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0212123_10033297

Scaffold Ga0212123_10033297


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10033297 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5212
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003175Metagenome / Metatranscriptome503N
F008922Metagenome / Metatranscriptome326Y
F014565Metagenome / Metatranscriptome262Y
F069868Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_100332972F003175GGAGGMSRIELSGKSHGKGRNGYFQLHSVELMNIPTDPDGQVLNIDFYPRRRVNCVGPARLLLNVEDATKLAQFLGEAVESRPPVASIEHGVLVCECGHRGTPRLEESGYQVSHALVEIVGDTIIASGWDGSSRAVSEEGDAYWLMCNGCGKLHPLPPELHIDWR
Ga0212123_100332973F008922AGGTGGMTTKQRLACGAAILRSIDARRQRTGNRNELLALEQAIVDRELIELDTGGLCDEKRELAGDRVGKRHVPAATRNTGARYDKDLRRANR
Ga0212123_100332976F014565AGGAGMKKAVNSGLILLSIGALLLSGCGLRQCLNTTMGCEPDRTEREKPCQEFGGPTTGCHFN
Ga0212123_100332979F069868N/AMTSSLVGNPRTPNPADMRQQREQHADYDQLNAASARDASSRRE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.