NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10010280

Scaffold Ga0212123_10010280


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10010280 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13258
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F000309Metagenome / Metatranscriptome1327Y
F001829Metagenome / Metatranscriptome629Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_100102801F001829GAGGMRKQYLHLCAYPCDACDGPVIAGSLAVRENEISKETDIRQVGAICLSCGHRQTTATAPARARHLLPMEWAPVDAIRASHLTTAFVEALNRAELH
Ga0212123_100102806F000309AGGAMNPHGLPNLEEVLESAIVLSWADLTRGAQSGLIHVEYGFAAGGTLDYLKVWSSLTRGHWLLACEYWMSESTFHGSGVRFDNGYESEGLSNILQRVMRYQTSFLLPENMGRQGLLQIPTPTTEETAAATALISEALDGLGSPLPQPAAA
Ga0212123_100102808F000042AGGAGLTNIKFVVRVHRGGTRAPDYVLRIDKTPVQMTTNRKLALIMGKFTAEDTVKSIQTSKCVPELVPVEVNVQ
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