NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10006016

Scaffold Ga0212123_10006016


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10006016 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20760
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F001854Metagenome / Metatranscriptome626Y
F003322Metagenome / Metatranscriptome494Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000601624F000042AGGAGMTNTKFVVRVNRGGTRAPEYVQRVDRTPVQMTLNRKLALVMGKLTAEDAVKSLQNSRRIPELVSVQVGA
Ga0212123_1000601627F001854GGAGGMKTFLLVIVSLCFALSVAALSPDAANQTPRKTQAIAGARLTTMMGTIFEDGDKLRFVTDQRAWRVDNPEILKGHEGHYVHAKAYVYPETNSIHITEVKLPTPSETEKDDIK
Ga0212123_1000601631F003322GGAGMVCQQLDQLEWDFIEARAESRDIDSLGWTDREFSCLDAILDHKREGHQGERCPGD
Ga0212123_100060167F001854GGAGMKTLLLAILSLCFCLSVVVSLSQEAPTQAPRKIQAAAGDRLTTIMGTVQEGGDKLRFVTEQRAWKVDNPEILEGHEGHYVHAEGYAYPDKNLIHITEVKIPTARETRIAVIK
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